Update mtdna_backend.py

mtdna_backend.py

@@ -249,20 +249,20 @@ async def summarize_results(accession, stop_flag=None, niche_cases=None):
         if niche_cases: 
             niche_cases = ", ".join(niche_cases)
         print("this is niche case inside summarize result: ", niche_cases)    
-        #outputs = await pipeline_classify_sample_location_cached(accession, stop_flag, save_df, niche_cases)
+        outputs = await pipeline_classify_sample_location_cached(accession, stop_flag, save_df, niche_cases)
         print("do the dummy output")
-        outputs = {"KY680825":{'isolate': 'NAT107', 
-                   'country': 
-                   {'ecuador': ['ncbi', 
-                                'rag_llm-The geographic location "Ecuador" is explicitly listed under "geo_loc_name" for the isolate NAT107. The text mentions "217 novel modern mitogenomes", indicating the sample is from a living individual.']}, 
-                   'sample_type': 
-                   {'modern': ['rag_llm-The geographic location "Ecuador" is explicitly listed under "geo_loc_name" for the isolate NAT107. The text mentions "217 novel modern mitogenomes", indicating the sample is from a living individual.']}, 
-                   'query_cost': '0.000941', 'time_cost': '9.246 seconds', 
-                   'source': ['https://doi.org/10.1093/molbev/msx267', 'https://pubmed.ncbi.nlm.nih.gov/29099937/'], 
-                   'file_chunk': 'The_Paleo-Indian_Entry_into_South_America_Accordin_merged_document.docx', 
-                   'file_all_output': 'The_Paleo-Indian_Entry_into_South_America_Accordin_all_merged_document.docx', 
-                   'signals': {'has_geo_loc_name': True, 'has_pubmed': True, 'accession_found_in_text': True, 'predicted_country': 'ecuador', 'genbank_country': 'ecuador', 'num_publications': 3, 'missing_key_fields': False, 'known_failure_pattern': False}}
-                  }
+        # outputs = {"KY680825":{'isolate': 'NAT107', 
+        #            'country': 
+        #            {'ecuador': ['ncbi', 
+        #                         'rag_llm-The geographic location "Ecuador" is explicitly listed under "geo_loc_name" for the isolate NAT107. The text mentions "217 novel modern mitogenomes", indicating the sample is from a living individual.']}, 
+        #            'sample_type': 
+        #            {'modern': ['rag_llm-The geographic location "Ecuador" is explicitly listed under "geo_loc_name" for the isolate NAT107. The text mentions "217 novel modern mitogenomes", indicating the sample is from a living individual.']}, 
+        #            'query_cost': '0.000941', 'time_cost': '9.246 seconds', 
+        #            'source': ['https://doi.org/10.1093/molbev/msx267', 'https://pubmed.ncbi.nlm.nih.gov/29099937/'], 
+        #            'file_chunk': 'The_Paleo-Indian_Entry_into_South_America_Accordin_merged_document.docx', 
+        #            'file_all_output': 'The_Paleo-Indian_Entry_into_South_America_Accordin_all_merged_document.docx', 
+        #            'signals': {'has_geo_loc_name': True, 'has_pubmed': True, 'accession_found_in_text': True, 'predicted_country': 'ecuador', 'genbank_country': 'ecuador', 'num_publications': 3, 'missing_key_fields': False, 'known_failure_pattern': False}}
+        #           }
         if stop_flag is not None and stop_flag.value:
             print(f"🛑 Skipped {accession} mid-pipeline.")
             return []