The dataset viewer is not available for this split.
Error code: StreamingRowsError
Exception: ArrowInvalid
Message: JSON parse error: Invalid value. in row 0
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/json/json.py", line 324, in _generate_tables
df = pandas_read_json(f)
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/json/json.py", line 38, in pandas_read_json
return pd.read_json(path_or_buf, **kwargs)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/pandas/io/json/_json.py", line 791, in read_json
json_reader = JsonReader(
path_or_buf,
...<16 lines>...
engine=engine,
)
File "/usr/local/lib/python3.14/site-packages/pandas/io/json/_json.py", line 905, in __init__
self.data = self._preprocess_data(data)
~~~~~~~~~~~~~~~~~~~~~^^^^^^
File "/usr/local/lib/python3.14/site-packages/pandas/io/json/_json.py", line 917, in _preprocess_data
data = data.read()
File "/usr/local/lib/python3.14/site-packages/datasets/utils/file_utils.py", line 839, in read_with_retries
out = read(*args, **kwargs)
File "<frozen codecs>", line 325, in decode
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xe0 in position 115: invalid continuation byte
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/utils.py", line 147, in get_rows_or_raise
return get_rows(
dataset=dataset,
...<4 lines>...
column_names=column_names,
)
File "/src/libs/libcommon/src/libcommon/utils.py", line 272, in decorator
return func(*args, **kwargs)
File "/src/services/worker/src/worker/utils.py", line 127, in get_rows
rows_plus_one = list(itertools.islice(safe_iter(ds, dataset=dataset), rows_max_number + 1))
File "/src/services/worker/src/worker/utils.py", line 483, in safe_iter
yield from ds.decode(False) if ds.features else ds
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 2951, in __iter__
for key, example in ex_iterable:
^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 2461, in __iter__
for key, pa_table in self._iter_arrow():
~~~~~~~~~~~~~~~~^^
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 2486, in _iter_arrow
for key, pa_table in self.ex_iterable._iter_arrow():
~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 547, in _iter_arrow
for key, pa_table in iterator:
^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/iterable_dataset.py", line 430, in _iter_arrow
for key, pa_table in self.generate_tables_fn(**gen_kwags):
~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/json/json.py", line 327, in _generate_tables
raise e
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/json/json.py", line 290, in _generate_tables
pa_table = paj.read_json(
io.BytesIO(batch), read_options=paj.ReadOptions(block_size=block_size)
)
File "pyarrow/_json.pyx", line 364, in pyarrow._json.read_json
File "pyarrow/error.pxi", line 155, in pyarrow.lib.pyarrow_internal_check_status
File "pyarrow/error.pxi", line 92, in pyarrow.lib.check_status
raise convert_status(status)
pyarrow.lib.ArrowInvalid: JSON parse error: Invalid value. in row 0Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
Sources
The whole slide images in this reposiotry come from different sources:
lung_carcinoma.ndpi: Lung Carcinoma sample from IDR, https://idr.openmicroscopy.org/webclient/img_detail/9846318/?dataset=10801
- sample.svs: sample data from openslide test data, https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/CMU-1-Small-Region.svs
GTEx Histology Slides:
- GTEX-1117F-0526.svs: Artery with sclerosis
- GTEX-11DXX-1626.svs: Small Intestine - Terminal Ileum
TCGA-READ Slides: This slides are from GDC
The corresponding store for each slide is saved as a .zarr.zip file with the same base name.
Annotation files are provided in .geojson format.
Disclaimer
This dataset is provided solely for the purpose of demonstrating the features of the LazySlide software. We do not guarantee the accuracy, completeness, or currency of the data. The sample data included in this repository is permitted for redistribution or use in research; however, users are responsible for reviewing and complying with the respective licenses or usage conditions associated with each dataset.
If you use GTEx data in your research, please make sure to read the GTEx data license.
If you use TCGA data in your research, please follow the corresponding license.
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